Abstract: As important components of marine organic matters especially of organic nitrogen, amino acids play an important role in organic matter cycles owing to their lability. The concentration, composition, and distribution of amino acids have been widely used to indicate the degradation state of organic matters in particulates and sediments of marine. Here, the distribution, influencing factors of amino acids and their role in indicating degradation of organic matters were systematically summarized. Gly, Glu, Ala, and Asp were the major components of amino acids in marine particulates and sediments. The contents of amino acids in the particles and sediments showed a decreasing tendency from the coastal waters to the open sea, and adecreased with the water depth. The lower value of %AA-C/TOC, %AA-N/TN and degradation index (DI) based on changes in the composition of amino acids indicated the higher degradation degrees of organic matters. The reactivity index (RI) and ratios of D-AA and L-AA (D/L) based on non-protein amino acids and D-AA were used to indicate the degradation of organic matter according to the bacterial transformation of amino acids, in which RI value closer to 0, higher D/L, and lower ratios of protein amino acids to non-protein amino acids (Asp/β-Ala and Glu/γ-Aba) indicated the higher degree of degradation in organic matters. The migration and transformation of amino acid were mainly affected by dissolved oxygen, nutrient concentrations, sources of organic matter, depositional environments and microbial activities. Further studies should focus on the synergistic effects of particles and sediments, and also the effects and the specific regulatory roles of microorganisms on amino acids.