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生态学杂志 ›› 2010, Vol. 29 ›› Issue (02): 401-406.

• 研究报告 • 上一篇    下一篇

拟南芥SSR检测体系的优化

高海荣1,2;钟鸣1;刘宛2**;李培军2;王磊1;周启星2   

  1. 1沈阳农业大学辽宁省农业生物技术重点实验室| 沈阳 110161;2中国科学院沈阳应用生态研究所陆地生态过程重点实验室| 沈阳 110016
  • 出版日期:2010-02-10 发布日期:2010-02-10

Optimization of SSR detection system forArabidopsis thaliana.

GAO Ha-rong1;ZHONG Ming1|LIU Wan2|LI Pei-jun2;WANG Lei1|ZHOU Qi-xing2   

  1. 1Key Laboratory of Agricultural Biotechnology of Liaoning Province, Shenyang Agricultural University, Shenyang 110161, China;2Key Laboratory of Terrestrial Ecological Process, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China
  • Online:2010-02-10 Published:2010-02-10

摘要: 以拟南芥(Arabidopsis thaliana)幼苗为实验材料,采用单因素筛选法及L16(45)正交实验方法,对简单序列重复(SSR)技术中聚合酶链式反应(PCR)组分、扩增程序、电泳检测等环节进行优化。优化25 μl反应体系为: 1×PCR Buffer、20 ng模板DNA、1.5 mmol·L-1 Mg2+、0.3 μmol·L-1引物、150 μmol·L-1 dNTPs和1.0 U Taq DNA 聚合酶。扩增程序为: 94 ℃预变性5 min,94 ℃变性30 s,57 ℃退火30 s,72 ℃延伸45 s,共30个循环,72 ℃延伸10 min。用非变性聚丙烯酰胺凝胶(EB染色)电泳检测并取得较好效果。利用该体系进行扩增,所得谱带清晰、稳定、非特异性带少。

关键词: 茶园, 节肢动物类群, 多样性, 稳定性

Abstract: Taking Arabidopsis thaliana as test material and by the methods of single factor selection and L16(45) orthogonal design, the amplification component, program, and electrophoresis detection in polymerase chain reaction (PCR) in simple sequence repeat (SSR)detection system were optimized. The optimized 25 μl reaction system contained 1×PCR Buffer, 20 ng DNA template, 1.5 mmol·L-1 of Mg2+, 0.3 μmol·L-1 of primers, 150 μmol·L-1of dNTPs, and 1.0 U of Taq DNA polymerase. The PCR amplification procedures consisted of an initial denaturing for 5 min at 94 ℃, followed by 30 cycles of denaturation for 30 s at 94 ℃, annealing for 30 s at 57 ℃, and an extension for 45 s at 72 ℃, with an ad
ditional extension period of 10 min at 72 ℃. By using nondenaturing polyacrylamide gel electrophoresis with ethidium bromide (EB) staining, the amplification products bands of SSR were easy to be identified. In the SSR system, amplification bands were clear and stable, and there were fewer nontarget bands.

Key words: Tea orchard, Arthropod assemblage, Diversity, Stability