分子系统学研究进展

摘要/Abstract

Abstract: Molecular systematics has developed very quickly these years,on which most studies of molecular ecology have been focused.In this paper,the main content of this comprehensive subject is briefly reviewed.We emphasized on its techniques,including their principles,advantages and disadvantages as their applications.Several problems have been enumerated which exist in recent research of molecular systematics.The development tendency of molecular systematics is also discussed in this paper.

Key words: Jiaojiang estuary, shrimps, community structure, diversity.

中图分类号:

徐宏发, 王静波. 分子系统学研究进展[J]. 生态学杂志, 2001, (3): 41-46.

Xu Hongfa, Wang Jingbo. Advances in Molecular Systematics[J]. cje, 2001, (3): 41-46.

参考文献

[1] 李明,王小明,盛和林,等.四种鹿属动物的线粒体DNA差异和系统进化关系研究[J].动物学研究,1999,45(1):99-105.
[2] 聂龙,施立明,和向东.独龙牛遗传多样性及其种群遗传结构的等位酶分析[J].遗传学报,1995,22(3):185-191.
[3] 黄京飞,刘次全.蛋白质结构的分形及其与进化关系的研究[J].动物学研究,1997,18(2):229-234.
[4] 兰宏,施立明.麂属(Muntiacus)动物线粒体DNA多态性及其遗传分化[J].中国科学(B辑),1993,23(5):489-497.
[5] 涂正超,张亚平,邱怀.中国牦牛线粒体DNA多态性及遗传分化[J].遗传学报,1998,25(3):205-212.
[6] 李霞,张咸宁,郑其平,等.用PCR-PFLP方法研究藏族HLA-DQA1和DQB1基因多态性[J].遗传学报,1998,25(5):398-402.
[7] 李云海,肖晗,张春庆,等.用微卫星DNA标记检测中国主要杂交水稻亲本的遗传差异[J].植物学报,1999,41(10):1061-1066.
[8] 宿兵,施立明,何光昕,等.大熊猫遗传多样性的蛋白电泳研究[J].科学通报,1994,39:742-745
[9] 张亚平,王文,宿兵,等.大熊猫微卫星DNA的筛选及其应用[J].动物学研究,1995,16:301-306.
[10] 胡志昂,恽锐,钟敏,等.检测植物DNA扩增多样性方法的比较和改进[J].植物学报,1997,39:138-144.
[11] 陈永久,张亚平,齐瑾,等.中国貉随机扩增多态DNA及其亚种分化关系[J].遗传学报,1998,25(1):16-21.
[12] 丁波,张亚平,刘自明,等.RAPD分析与白头叶猴分类地位的探讨[J].动物学研究,1999,20(1):1-6
[13] 常青,周开亚,王义权,等.太湖猪遗传多样性和系统发生关系的RAPD分析[J].遗传学报,1999,26(5):480-488
[14] 汪小全,邹喻苹,张大明,等.RAPD应用于遗传多样生和系统学研究中的问题[J].植物学报,1996,38(12):954-962.
[15] 姚鸿,谢纬武,李传友,等.D2型小麦细胞质雄性不育系及其保持系和恢复系线粒体DNA的比较研究[J].遗传学报,1998,25(1):67-73
[16] 伊佟明,黄敏仁.AFLP分子标记及其在植物育种上的应用[J].生物工程进展,1997,17(1):6-11.
[17] 尹佟明,孙晔,易能君,等.美洲黑杨无性系AFLP指纹分析[J].植物学报,1998,40(8):778-780.
[18] 陈洪,朱立煌,李冬梅,等.致病性念珠菌DNA的AFLP指纹图谱[J].科学通报,1996,41(17):935-938.
[19] 赵晓鹃,刘金毅,蔡有余,等.发展中的DNA测序技术[J].生物工程进展,1997,17(4):51-54.
[20] 王义权,周开亚,徐珞珊,等.几种游蛇的cyt b gene片段序列分析及其演化关系[J].动物学报,1999,45(3):332-338.
[21] 王建波,张文驹,陈家宽.核rDNA的ITS序列在被子植物系统与进化研究中的应用[J].植物分类学报,1999,37(4):407-416.
[22] 王金玲.瞿礼嘉.陈军,等.CHS基因外显子2的进化规律及其用于植物分子系统学研究的可行性[J].科学通报,2000,45(9):942-950.
[23] Goodma, M. Man′ place in the phylogeny of the primates as reflected in serum protein[A]. In: Washburn, S. L. (ed). Classification and Human Evolution [C]. Chicago Aldine Press, 1963.204-233.
[24] Hubby, J. L. and Throckmortn, L. H. Protein differences in\Drosophila. Ⅱ. Comparative species[J]. Amer. Nat., 1965,102:193-205.
[25] Hayasaka, K. et al. Phylogenetic relationships among apanese,rhesus, formoasn, and crab-eating monkeys, inferred from restriction enzyme analysis of mitochondrial DNAs [J]. Mol. Biol.Ecol., 1988, 5:270-281.
[26] Wakisa, G. et al. Characterization of Zuba cattle breeds In Tanzania using random amplified polyrnorphic DNA markers[J]. Anim Genet, 1994, 25: 89-94.
[27] Poteaux, C. et al. Temporal variations of genetic introgression in stocked brown trout (Salmo trutta L.)populations[J]. J. Fish Biol., 1998, 53: 701-713.
[28] Semerikov, V. L. and Lascoux, M. Genetic relationship among Eurasian and American Larix species based on allozymes [J]Heredity, 1999, 83: 62-70.
[29] Mamuris, Z. et al. Introspecies genetic variation of striped red mullet (Mullus aurmuletus L.) in the Mediterranean Sea assessed by allozyme and amplified polymorphic DNA (RAPD)analysis[J]. Heredity, 1999, 83: 30-38.
[30] Feng, D. F. and Dooittle, R. F. Progressive sequence alignment as a prerequisite to correct phylogenetic trees[J]. J. Mol. Evol.,1987, 25: 351-360.
[31] Moritz, C. et al. Evolution of animal mitochondrial DNA: relevance for population biology and systematics [J]. Annu. Rev.Ecol. & Syst., 1987, 18: 269-292.
[32] Birky, C. W. et al. Organelle gene diversity under migration and drift: equilibrium expectations approach to nuclear genes [J].Genet., 1989, 121: 613-527.
[33] Solignac, M. et al. Mitochondrial DNA evolution in melanogaster species subgroup of Drosophila[J]. J. Mol. Evol., 1986, 23:31-40.
[34] Palumbi, S. R. and Baker, C. S. EPIC amplifications of nuclear DNA introns: Opposing views of poupulation structure using mitochondrial and nuclear sequences from humback whales [J].Mol. Bio. & Evol. , 1994, 11:426-435.
[35] Charlesworth, B. et al. The evolutionary dynamics of repetitive DNA in eukaryotes[J]. Nature, 1994, 371:215.
[36] Bowcock, A. M. et al. High resolution of human evolutionary trees with polynorphic microsatellite [J]. Nature, 1993, 368:445-457.
[37] Valdes, A. M. et al. Allele frequencies at microsatellite loci: the stepwise mutation model revised[J]. Genetics, 1993, 133:737-749.
[38] Di rienzo, A. et al. Mutational processes of simple-sequence repeat loci in human populations[J]. Proc. Nati.Acad. Sci., USA.1994,91:3166-3170.
[39] Taylor, A. C. et al. Genetic variation of microsatellite loci in a bottlenecked species: the northern hsory-nosed wombat lasiorhintis kreffiti[J]. Mol. Ecol., 1994, 3:277-290.
[40] Estoup, A. et al. Microsatellite variation in honeybee(Apis mellifera L. ): hierarchical genetic structure and test of the infinite ellele and stepwise mutation models[J]. Genetics, 1995, 140:679-695.
[41] Beebee, T. J. C. et al. Archive contributions to a molecular phyloeography of the toad Bufo calamita in Britain[J]. Bio. Gene.,1998, 36(5/6):219-228.
[42] Baruffi, L. et al. Popumorphism comparison between RAPD and multilocus enzyme electrophoresis data [J]. Hered., 1995, 74:425-437.
[43] Buchanna, F. C. et al. Determination of evolutionary relationships among sheep breeds using microsatellite [J]. Genomics, 1994,22: 397-403.
[44] Welsh, J. and Mmclell, M. Fingerprinting genomes using PCR with arbitrary primera[J]. Nucl. Acid. Res., 1990, 18:7213-7218.
[45] Harlward, T. M. et al. Use of single-primer DNA amplifications in genetic studies of peanut (Arachis hypoaea L.)[J]. Pl. Mol.Bio., 1992, 18(3) :315-325.
[46] Rieseberg, L. H. Homology among RAPD fragments in interspecific comparisons[J]. Mol. Ecol., 1996, 5:99-105.
[47] Kremer, A. and Petit, R. J. Gene diversity in natural populations of oak species[J]. Ann. Sci. For., 1993, 50:186-202.
[48] Petit, R. J. et al. Geographic structure of chloroplast DNA polymorphisms in European oaks[J]. Theor.Appl. Genet., 1993,87:122-128.
[49] Zanette, A. et al. Geographic variation of intrespecific differentiation between Quercus robur and Q. Petraea[J]. Fore. Genet. ,1994, 1(2) :111-123.
[50] Paran, I. and Michelmore, R. W. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce[J]. Theo. Appl. Genet., 1993, 85:985-993.
[51] Zabeau, M. and Vos, P. Selective Restriction Fragment Amplification: A General Method for DNA Fingerprinting [M]. European Patent Application. No. 0534858 AL. 1993.
[52] Vos, P. et al. AFLP: a new technique for DNA fingerprinting[J]. Nucl. Acids Res., 1995, 23 (21): 4407-4414.
[53] Herman, J. et al. The inheritance and chrormosomal localization for AFLP markers in a non-inbred potato offspring[J]. Mol.Breed., 1995, 1: 397-410.
[54] Bccker, J. et al. Combined mapping of AFLP and RFLP markers in barely[J]. Mol. Gen. Genet., 1995,249:65-73.
[55] Sharma, S. K. et al. AFLP analysis of the diversity and phylogeny of lens and its comparison with RAPD analysis[J]. Theo. Appl.Genet., 1996, 93:751-758.
[56] Kelly, M. et al. Mitocbondrial DNA analysis of the systematic relationships within the Peromyscus maniculatus species group[J]. J. of Matmm., 1997, 78(3) :733-743.
[57] John, W. et al. High variability for control-regionsequences in a marine mamal: implication for conservation and biogeography of steller sea lions( Eumetopias jubatus)[J]. J. of Mamm., 1996,77(1) :95-108.
[58] Hilu, K. W. and Liamg, H. The math gene: sequence variation and application in plant systematics[J]. Am. J. Eot., 1997, 84:830-839.
[59] Chase, M. W. et al. Phylogenetics of seed plants: an analysis of nucleotide sequencea from the plastid gene rbcl [J]. Ann. Missouri Bot. Gard., 1993, 80:528-580.
[60] Baldwin, B. G. et al. The ITS region of nuclear ribosomal DNA: a valnable source of evidence or angiosperm phylogeny[J]. Ann.Missouri Eot Gard 1995, 82: 247-277.