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从松属相关物种筛选红松微卫星标记及其种群遗传多样性分析

张悦1,2,易雪梅1,2,姬兰柱1**   

  1. 1中国科学院沈阳应用生态研究所, 森林与土壤生态国家重点实验室, 沈阳 110016;2中国科学院大学, 北京 100049)
  • 出版日期:2013-09-10 发布日期:2013-09-10

Screening of Pinus koraiensis microsatellite makers from relative species of Pinus and analysis of population genetic diversity.

ZHANG yue1,2, YI Xue-mei1,2, JI Lan-zhu1**   

  1. (1Institute of Applied Ecology, Chinese Academy of Sciences, State Key Laboratory of Forest and Soil Ecology, Shenyang 110016, China; 2University of Chinese Academy of Sciences, Beijing 100049, China)
  • Online:2013-09-10 Published:2013-09-10

摘要: 近缘物种筛选法是获取微卫星引物的主要方法之一。利用松属植物EST-SSRs的种间通用性,从马尾松微卫星引物中筛选出红松EST-SSR标记,并与已有的红松基因组SSR标记进行对比分析。采集长白山露水河红松母树林4个种群的248个样本,分析种群遗传多样性。结果表明:马尾松与红松的种间通用率为27.27%,松属内不同亚属物种间的种间通用性偏低;与红松基因组SSRs相比,EST-SSRs的单位点等位基因数(Na)、有效等位基因数(Ne)、观测杂合度(Ho)、期望杂合度(He)等遗传多样性参数均较低;用2组引物分析4个种群的遗传多样性,发现有效等位基因均能反映出不同种群遗传变异的趋势,基因多样性均能反映出遗传同一性的差异,说明两组引物都能准确地反映红松种群的遗传多态性水平,新筛选的EST-SSRs可以用于红松种群遗传多样性研究。

关键词: 土壤酶活性, 土壤呼吸, 土壤养分, 亚高山森林,

Abstract: Screening relative species SSRs is one of the main methods for obtaining microsatellite makers. Based on the interspecific transferability of Pinus EST-SSRs, this paper screened out the EST-SSRs of Pinus koraiensis from the microsatellite markers of P. massoniana, and analyzed the population genetic diversity with the known Pinus genomic SSRs and EST-SSRs. The results showed that the interspecific transfer rate between P. massoniana and P. koraiensis was 27.27%, and the transferability in Pinus subgenus was lower. As compared with genomic SSRs, the numbers of alleles (Na), effective alleles (Ne), observed heterozygosity (Ho), and expected heterozygosity (He) of EST-SSRs were obviously lower. The genetic diversity analyses of four populations through two sets of markers indicated that the two sets of effective alleles could reflect the differences in the genetic variation trend between the four populations, and gene diversity could also reflect the differences in the genetic identity between the four populations, which demonstrated that the two groups of the markers could accurately reflect the genetic diversity levels of the four populations, and the newly screened EST-SSRs could be used to analyze the population genetic variation.

Key words: soil enzyme activity, naphthalene, soil respiration, soil nutrient, subalpine forest.