Methanotrophs bacteria in special environment: A review.

doi:10.13287/j.1001-9332.202104.031

Abstract

Abstract: Methanotrophs are important and unique prokaryotes widely distributed in the nature. They can oxidize methane and live at a moderate temperature in the conditions withpH=7. In addition, many methanotrophs have been isolated from various special conditions within a wide range of pH value and temperature, including acid sphagnum moss wetlands, acid forest soils, hot springs and high-temperature geothermal areas near volcanic craters, soda-saline lakes, and marine sediments. Here, we introduced the classification, properties and influencing factors of methanotrophs in these special conditions, and reviewed relevant technological researches and engineering applications, with the aim to facilitate further studies of natural biodiversity as well as global carbon and hydrogen cycles.

Key words: specific environment, extreme condition, methanotrophs, Verrucomicrobia, Proteobacteria

AI Jia, LYU Yang, LI Yan-cheng, ZHONG Xiong, LI Jiang. Methanotrophs bacteria in special environment: A review.[J]. Chinese Journal of Applied Ecology, 2021, 32(4): 1509-1517.

References

[1] Feldman DR, Collins WD, Biraud SC, et al. Observationally derived rise in methane surface forcing mediated by water vapour trends. Nature Geoence, 2018, 11: 1-6
[2] 杨祖洁. 基于厌氧甲烷氧化的微生物燃料电池产电性能研究. 硕士论文. 福州: 福建农林大学, 2019 [Yang Z-J. Study on the Electrogenic Performance of Microbial Fuel Cell Based on Anaerobic Oxidation of Methane. Master Thesis. Fuzhou: Fujian Agriculture and Forestry University, 2019]
[3] Conrad R. The global methane cycle: Recent advances in understanding the microbial processes involved. Environmental Microbiology Reports, 2010, 1: 285-292
[4] 蔡朝阳, 何崭飞, 胡宝兰. 甲烷氧化菌分类及代谢途径研究进展. 浙江大学学报: 农业与生命科学版, 2016, 42(3): 273-281 [Cai Z-Y, He Z-F, Hu B-L. Progresses in the classification and methane-oxidizing bacteria. Journal of Zhejiang University: Agricultural and Life Sciences, 2016, 42(3): 273-281]
[5] Hanson RS, Hanson TE. Methanotrophic bacteria. Microbiological Reviews, 1996, 60: 439-471
[6] 赵天涛, 邢志林, 张丽杰. 兼性甲烷氧化菌的发现历程. 微生物学报, 2013, 53(8): 781-789 [Zhao T-T, Xing Z-L, Zhang L-J. Research progress and discovery process of facultative methanotrophs: A review. Acta Microbiologica Sinica, 2013, 53(8): 781-789]
[7] 颜双双. 秸秆还田对寒地稻田甲烷排放及产甲烷菌的影响. 硕士论文. 哈尔滨: 东北农业大学, 2016 [Yan S-S. Effect of Straw Returning on Methane Emission and Methanogens in Rice Field in Cold Region. Master Thesis. Harbin: Northeast Agricultural University, 2016]
[8] Dedysh SN, Khmelenina VN, Suzina NE, et al. Methy-locapsa acidiphila gen. nov. sp nov., a novel methane- oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. International Journal of Systematic and Evolutionary Microbiology, 2002, 52: 251-261
[9] Dedysh SN, Liesack W, Khmelenina VN, et al. Methy-locella palustris gen. nov. sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs. International Journal of Systematic & Evolutionary Microbiology, 2000, 50: 955-969
[10] Vorobev AV, Baani M, Doronina NV, et al. Methylofe-rula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase. International Journal of Systematic & Evolutionary Microbiology, 2011, 61: 2456-2463
[11] Stoecker K, Bendinger B, Schoening B, et al. Cohn’s Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase. Proceedings of the National Academy of Sciences of the United States of America, 2006, 103: 2363-2367
[12] Danilova OV, Suzina NE, Jodie VDK. A new cell morphotype among methane oxidizers: A spiral-shaped obligately microaerophilic methanotroph from northern low-oxygen environments. ISME Journal, 2016, 10: 2734-2743
[13] Dedysh SN, Knief C, Dunfield PF. Methylocella species are facultatively methanotrophic. Journal of Bacteriology, 2005, 187: 4665-4670
[14] Dunfield PF, Belova SE, Vorob AV, et al. Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa. International Journal of Systematic & Evolutionary Microbiology, 2010, 60: 2659-2664
[15] Pol A, Heijmans K, Harhangi HR, et al. Methanotrophy below pH 1 by a new Verrucomicrobia species. Nature, 2007, 450: 874-878
[16] Islam T, Jensen S, Reigstad LJ, et al. Methane oxidation at 55 ℃ and pH 2 by a thermoacidophilic bacte-rium belonging to the Verrucomicrobia phylum. Procee-dings of the National Academy of Sciences of the United States of America, 2008, 105: 300-304
[17] Dunfield PF, Yuryev A, Senin P, et al. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature, 2007, 450: 879-882
[18] Teeseling MCFV, Pol A, Harhangi HR, et al. Expanding the Verrucomicrobial methanotrophic world: Description of three novel species of Methylacidimicrobium gen. nov. Applied and Environmental Microbiology, 2014, 80: 6782-6791
[19] Eshinimaeva BT, Khmeleninaa VN, Yu AT. Physiological, biochemical, and cytological characteristics of a haloalkalitolerant methanotroph grown on methanol. Microbiology, 2002, 71: 512-518
[20] Eshinimaev BT, Khmelenina VN, Trotsenko YA. First isolation of a type ii Methanotroph from a soda lake. Microbiology, 2008, 77: 628-631
[21] Rahalkar M, Bussmann I, Schink B. Methylosoma difficile gen. nov. sp. nov., a novel methanotroph enriched by gradient cultivation from littoral sediment of Lake Constance. International Journal of Systematic & Evolutionary Microbiology, 2007, 57: 1073-1080
[22] Hoefman S, Van d HD, Iguchi H, et al. Methyloparacoccus murrellii gen. nov. sp. nov., a methanotroph isolated from pond water. International Journal of Systema-tic & Evolutionary Microbiology, 2014, 64: 2100-2107
[23] Wang P, Wang F, Xu M, et al. Molecular phylogeny of methylotrophs in a deep-sea sediment from a tropical west Pacific Warm Pool. FEMS Microbiology Ecology, 2004, 47: 77-84
[24] Abdallah RZ, Adel M, Ouf A, et al. Aerobic methanotrophic communities at the Red Sea brine-seawater interface. Frontiers in Microbiology, 2014, 5: 487
[25] Gagliano AL, D'Alessandro W, Tagliavia M, et al. Methanotrophic activity and diversity of methanotrophs in volcanic geothermal soils at Pantelleria (Italy). Biogeosciences, 2014, 11: 5865-5875
[26] 马若潺, 魏晓梦, 何若. 低氧生境中好氧甲烷氧化菌的缺氧耐受机理及种群结构研究进展. 应用生态学报, 2017, 28(6): 2047-2054 [Ma R-C, Wei X-M, He R. Mechanism of hypoxia-tolerance and community structure of aerobic methanotrophs in O₂-limited environments: A review. Chinese Journal of Applied Ecology, 2017, 28(6): 2047-2054]
[27] Hernandez ME, Beck DAC, Lidstrom ME, et al. Oxygen availability is a major factor in determining the composition of microbial communities involved in methane oxidation. PeerJ, 2015, 3: 801
[28] 江梅, 辛嘉英, 邓晓萍, 等. 甲烷氧化菌生产高附加值产品的研究进展. 石油化工, 2018, 47(4): 395-400 [Jiang M, Xin J-Y, Deng X-P, et al. Research progress on production of high added value products by methanotrophs. Petrochemical Technology, 2018, 47(4): 395-400]
[29] 韩亚涛. 甲烷氧化菌的分离鉴定及在煤表面吸附特性研究. 硕士论文. 徐州: 中国矿业大学, 2019 [Han Y-T. Isolation and Identification of Methane Oxidizing Bacteria and Adsorption Characteristics on Coal Surface. Master Thesis. Xuzhou: China University of Mining and Technology, 2019]
[30] Gutierrez T, Aitken MD. Role of methylotrophs in the degradation of hydrocarbons during the deepwater horizon oil spill. ISME Journal, 2014, 8: 2543-2545
[31] 杨娅男, 李彦澄, 李江, 等. 基于甲烷氧化菌的城镇污水厂尾水极限脱氮系统构建及机制. 环境科学, 2020, 41(4):1787-1793 [Yang Y-N, Li Y-C, Li J, et al. Construction and mechanism of methanotroph- based ultimate denitrification system for tailwater of urban sewage plants. Environmental Science, 2020, 41(4): 1787-1793]
[32] 姜万田. 国内外城市生活垃圾处理处置技术及发展趋势. 海峡科技与产业, 2017(11): 135-136 [Jiang W-T. Domestic and foreign urban domestic waste treatment and disposal technologies and development trends. Technology and Industry across the Straits, 2017(11): 135-136]
[33] 张相锋, 杨文静, 董世魁, 等. 生物覆盖层基质对垃圾填埋场甲烷氧化的影响. 生态环境学报, 2010, 19(1): 72-76 [Zhang X-F, Yang W-J, Dong S-K, et al. Effects of matrix factors on methane oxidation of landfill bio-cover. Ecology and Environmental Sciences, 2010, 19(1): 72-76]
[34] 龙於洋, 方圆, 廖燕, 等. 甲烷氧化菌在填埋场覆盖层的工程应用(Ⅰ): 分离与筛选. 环境科学学报, 2015, 35(7): 2210-2216 [Long Y-Y, Fang Y, Liao Y, et al. Engineering application of methanotrophs in landfill coverlayer (I): Isolation and characterization. Acta Scientiae Circumstantiae, 2015, 35(7): 2210-2216]
[35] 魏素珍. 甲烷氧化菌及其在环境治理中的应用. 应用生态学报, 2012, 23(8): 2309-2318 [Wei S-Z. Methanotrophs and their applications in environment treatment: A review. Chinese Journal of Applied Ecology, 2012, 23(8): 2309-2318]
[36] Mohammadi S, Pol A, van Alen TA, et al. Methylacidiphilum fumariolicum SolV, a thermoacidophilic ‘Knallgas’ methanotroph with both an oxygen-sensitive and -insensitive hydrogenase. The ISME Journal, 2017, 11: 945-958
[37] 王晴. 极地环境氮转化及其功能微生物群落多样性. 博士论文. 合肥: 中国科学技术大学, 2019 [Wang Q. Nitrogen Transformation Processes and the Diversity of Functional Microbial Communities in Polar Environment. PhD Thesis. Hefei: University of Science and Technology of China, 2019]
[38] 刘雅慈, 何泽, 张胜, 等. 油气田土壤甲烷氧化菌实时荧光定量PCR检测技术的建立与应用. 微生物学通报, 2014, 41(6): 1071-1081 [Liu Y-C, He Z, Zhang S, et al. Development and application of a fluorescent quantitative real-time PCR technique for detection of methane-oxidizing bacteria in oil and gas field soil. Microbiology China, 2014, 41(6): 1071-1081]
[39] 刘菊梅. 乌梁素海湿地挺水植物根圈脱氮甲烷氧化菌群多样性及分布特征研究. 博士论文. 呼和浩特: 内蒙古大学, 2018 [Liu J-M. Diversity of Denitrifying Methanotrophs and Their Distribution in Root Zone of Three Emergent Macrophytes in Eutrophic Wuliangsuhai Wetland. PhD Thesis. Hohhot: Inner Mongolia University, 2018]
[40] 汤玉平, 高俊阳, 赵克斌, 等. 典型油气藏上方甲烷氧化菌群的分子生物学解析. 石油实验地质, 2014, 36(5): 605-611 [Tang Y-P, Gao J-Y, Zhao K-B, et al. Molecular biological analysis of methanotrophic bacterial community above typical oil and gas reservoirs. Petroleum Geology & Experiment, 2014, 36(5): 605-611]
[41] Li JY. A rapid metagenomic dna extraction from sediments: Potassium dichromate SDS method. Agricultural Science & Technology, 2015, 16: 1592-1595]
[42] 唐育虹. 波谱解析在蛋白质组学中的应用与研究. 硕士论文. 上海: 同济大学, 2006 [Tang Y-H. Application and Research of Spectrum Analysis in Proteomics. Master Thesis. Shanghai: Tongji University, 2006]
[43] 禹伟, 高教琪, 雍进. 蛋白质组学和代谢组学在微生物代谢工程中的应用. 色谱, 2019, 37(8): 798-805 [Yu W, Gao J-Q, Yong J. Application of proteomics and metabolomics in microbial metabolic engineering. Chinese Journal of Chromatography, 2019, 37(8): 798-805]
[44] 李昀地. 重金属离子对甲烷氧化菌生长特性的影响. 硕士论文. 太原: 山西大学, 2011 [Li Y-D. Effects of Heavy Metal Ions on the Growth Characterization of Methanotrophic Bacteria. Master Thesis. Taiyuan: Shanxi University, 2011]
[45] 张辰辰, 孙立新. 基于代谢组学的细胞内源性代谢物研究进展. 药学学报, 2012, 47(8): 978-985 [Zhang C-C, Sun L-X. Research progress on intracellular metabolites based on metabolomics. Acta Pharmaceutica Sinica, 2012, 47(8): 978-985]
[46] 徐天润, 刘心昱, 许国旺. 基于液相色谱-质谱联用技术的代谢组学分析方法研究进展. 分析测试学报, 2020, 39(1): 10-18 [Xu T-R, Liu X-Y, Xu G-W. Advances of analytical methods for liquid chromatography-mass spectrometry-based metabolomics. Journal of Instrumental Analysis, 2020, 39(1): 10-18]
[47] 董玲玲, 柴逸峰, 曹颖瑛, 等. 微生物代谢组学的前处理及分析技术. 微生物学通报, 2009, 36(12): 1882-1887 [Dong L-L, Chai Y-F, Cao Y-Y, et al. Preparation and analytical method in the study of microbial metabolomics. Microbiology China, 2009, 36(12): 1882-1887]
[48] 闫超泽, 张帅, 辛欣, 等. 铜对甲烷氧化菌素生产的影响及甲烷氧化菌素的纯化. 农产品加工(学刊), 2012(3): 14-17, 72 [Yan C-Z, Zhang S, Xin X, et al. Effect of copper on methanobactin fermentation and methanobactin purification. Academic Periodical of Farm Products Processing, 2012(3): 14-17, 72]