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Research advances in trait-based approaches in soil animal community ecology
SUN Xin, XIE Zhijing, QIAO Zhihong, GAO Meixiang, YIN Rui, CHANG Liang, WU Donghui, LIU Manqiang, ZHU Yongguan
Chinese Journal of Applied Ecology 2024, 35 (
4
): 1150-1158. DOI:
10.13287/j.1001-9332.202404.028
Abstract
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935
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Functional traits are indicators of the responses and adaptation of organisms to environmental changes and cascade to a series of ecosystem functions. The functional traits of soil animals are sensitive to environmental factors and may characterize and predict the changes of ecosystem functions. Multiple dimensions of biodiversity that combing species, phylogenetic, and functional diversity improves the understanding of distribution patterns, community assembly mechanisms and ecosystem functions of soil animals. In this review, we listed the categories of soil animal functional traits and their ecological significance, and summarized current researches on the responses of soil animal communities to environmental changes and the community assembly processes based on trait-based approaches. We proposed to strengthen the study on the impacts of eco-evolution processes of biotic interactions to soil animal functional traits, establish the database of soil animal functional traits, and apply trait-based approaches in the ecological restoration in the future, which would benefit soil biodiversity conservation and sustainability of soil ecosystems.
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Status and perspective of soil fauna eco-geography in China
ZHANG Weixin, SHEN Zhifeng, ZHAO Cancan, MA Zihe, YANG An, SHAO Yuanhu, ZHAO Jie, FU Shenglei
Chinese Journal of Applied Ecology 2024, 35 (
5
): 1435-1446. DOI:
10.13287/j.1001-9332.202405.029
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730
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As regulators of the surface land processes, soil fauna communities are the vital foundations for healthy terrestrial ecosystems. Soil fauna have been studied in China for more than 70 years. Great progresses have been achieved in exploring soil fauna species composition and geographical distribution patterns. Soil fauna eco-geography, as a bridge between soil fauna geographic patterns and ecosystem services, has a new development opportunity with the deep recognition of soil fauna ecological functions. Soil fauna eco-geography research could be partitioned into four dimensions including the spatio-temporal patterns of: 1) the apparent characteristics of soil fauna community, such as species composition, richness and abundance; 2) the intrinsic characteristics of soil fauna community, such as dietary and habits; 3) soil fauna-related biotic and abiotic interactions especially those indicating drivers of soil fauna community structure or shaping the roles of soil fauna in ecosystems; and 4) soil fauna-related or -regulated key ecological processes. Current studies focus solely on soil fauna themselves and their geographical distributions. To link soil fauna geography more closely with ecosystem services, we suggested that: 1) converting the pure biogeography studies to those of revealing the spatio-temporal patterns of the soil fauna-related or regulated key relationships and ecological processes;2) expanding the temporal and spatial scales in soil fauna geographical research;3) exploring the integrated analysis approach for soil fauna-related data with multi-scales, multi-factors, and multi-processes;and 4) establishing standard reference systems for soil fauna eco-geographical researches. Hence, the change patterns of ecological niche of soil fauna communities could be illustrated, and precision mani-pulations of soil fauna communities and their ecological functions would become implementable, which finally contributes to ecosystem health and human well-being.
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Characteristics of gut microbiome communities in the invasive African giant snail under urbanization gradient
XIE Jing, ZHANG Yiyue, TANG Zhonghui, SUN Xin
Chinese Journal of Applied Ecology 2023, 34 (
10
): 2813-2819. DOI:
10.13287/j.1001-9332.202310.030
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To investigate the diversity and community structure of gut microbiome of the invasive species,
Achatina fulica
, along an urbanization gradient, we collected 30
A. fulica
samples from five parks in the urban, suburban, and rural areas of Xiamen City. Using full-length 16S rRNA gene sequencing performed by the third generation PacBio sequencing platform, we analyzed the community characteristics of gut microbiome and soil microbiome in different habitats. We found a significant disparity between the composition of gut microbiome of
A. fulica
and that of the soil microbiome in their habitats. Furthermore, the gut microbiome of
A. fulica
were more sensitive to urbanization. The microbial α-diversity indices (Sobs, Chao, Shannon indices) in the soil of
A. fulica
habitats were consistently higher than those within their guts. Despite the similar β-diversity indices of microbial communities in urban, suburban, and rural soils, we found a significant discrepancy in gut microbiome composition. Urbanization significantly influenced
A. fulica
gut microbiome composition. Gut microbiome of
A. fulica
in urban and suburban regions primarily consisted of Enterobacteriaceae, Xanthomonadaceae, and Mycoplasmataceae, while that in rural areas chiefly composed of Streptococcaceae and Paenibacillaceae. The diversity and abundance of potential human pathogenic bacteria within the gut microbiome of
A. fulica
significantly increased in urban environments, suggesting that urbanization escalated the risk of
A. fulica
transmitting potential pathogens.
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Effects of ant nesting on seasonal dynamics of soil N
2
O emission in a secondary tropical forest
ZHANG Kunfeng, WANG Shaojun, WANG Ping, ZHANG Lulu, FAN Yuxiang, XIE Lingling, XIAO Bo, WANG Zhengjun, GUO Zhipeng
Chinese Journal of Applied Ecology 2023, 34 (
5
): 1218-1224. DOI:
10.13287/j.1001-9332.202305.009
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530
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We assessed the seasonal dynamics of N
2
O emission in ant nests soils in secondary tropical
Millettia leptobotrya
forest of Xishuangbanna by using the static chamber-gas chromatography method, and determined the lin-kages between ant-mediated changes in soil properties (
e.g.
, carbon pool, nitrogen pool, and temperature and humidity) and N
2
O emission. The results showed that ant nesting significantly affected soil N
2
O emission. The ave-rage soil N
2
O emission (0.67 mg·m
-2
·h
-1
) in ant nests was 40.2% higher than that in the control (0.48 mg·m
-2
·h
-1
). N
2
O emission in ant nests and the control showed substantial seasonal variation, with higher rate in June (0.90 and 0.83 mg·m
-2
·h
-1
, respectively) than that in March (0.38 and 0.19 mg·m
-2
·h
-1
, respectively). Ant nesting significantly increased the values (7.1%-74.1%) of moisture, temperature, organic carbon, total nitrogen, hydrolytic nitrogen, ammonium nitrogen, nitrate nitrogen, and microbial biomass carbon, but decreased pH (9.9%) compared with the control. Results of structural equation model showed that soil N
2
O emission was promoted by soil C and N pool, temperature, and humidity, but was inhibited by soil pH. The explained extents of soil nitrogen pool, carbon pool, temperature and humidity, and pH for N
2
O emission changes were 37.2%, 27.7%, 22.9% and 9.4%, respectively. Therefore, ant nesting regulated N
2
O emission dynamics by changing nitrification and denitrification substrates (
e.g
., nitrate and ammoniacal nitrogen), carbon pool, and micro-habitat (temperature and moisture) of soil in the secondary tropical forest.
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Application of stable isotope techniques in soil food web research
WANG Xiao, LIANG Siwei, TIAN Yijia, LIU Xiaotong, LIANG Wenju, ZHANG Xiaoke
Chinese Journal of Applied Ecology 2023, 34 (
10
): 2861-2870. DOI:
10.13287/j.1001-9332.202310.013
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514
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Stable isotope technique is important for understanding the structure and function of soil food web, which is considered as a belowground black box. We reviewed typical application cases of stable isotope techniques in the research of soil food webs, including to determine food sources and feeding preferences of soil fauna by using isotopes, and to analyze the trophic structure of soil food webs through isotope fractionation effects during the process of feeding and nutrient sequestration by soil fauna. Additionally, stable isotope techniques could reveal the role of soil biota at different trophic levels within soil food web in ecosystem matter and energy flow, which favored to carry out accurate and efficient research on the contribution of soil food webs to soil carbon and nitrogen cycling process and the corresponding influence mechanism. We further put forward the limitations of current stable isotope techniques and the future development directions.
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Community structure of soil fauna under different tree species in subtropical forests
WEN Huihui, WU Fuzhong, ZHANG Huiling, PENG Qingqing, QIU Danni, PENG Yan
Chinese Journal of Applied Ecology 2023, 34 (
10
): 2797-2804. DOI:
10.13287/j.1001-9332.202310.031
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505
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Soil fauna play an important role in key functions of ecosystem such as material cycling. Litter quality and microenvironment of different tree species may regulate soil fauna community structure. In this study, we investigated soil fauna community structure, the differences of taxonomic and functional groups, and the regulatory factors under eight dominant tree species in August 2022. We captured 567 soil fauna (except for termites and ants), belonging to 3 phyla, 10 classes, 26 orders, and 99 families, with Achipteriidae, Trygoniidae, Poduridae, and Isotomidae as the dominant species. Tree species significantly affected soil fauna abundance, following an order:
Michelia macclurei
>
Elaeocarpus decipiens
>
Castanopsis carlesii
>
Cunninghamia lanceolata
>
Lindera communis
>
Schima superba
>
Pinus massoniana
>
Liquidambar formosana
. However, the richness, evenness, and diversity of soil fauna under different tree species were significantly different. Richness and diversity of
M. macclurei
,
C. lanceolatas
soil fauna were relatively high, while
L. formosana
,
C. carlesii
were relatively low. The evenness of meso-microfauna of
L. formosana
was the highest, which was significantly higher than that of
M. macclureis
and
E. decipiens
. The evenness of macrofauna and total soil fauna was not significantly different among the eight tree species. In addition, the abundance of omnivores and herbivores soil fauna was relatively high under
M. macclurei
, but relatively low under
E. decipiens
. The abundance of saprophages and predators soil fauna of
E. decipiens
,
M. macclurei
was higher than
L. formosana
, while saprophages was mainly meso-microfauna. Results of redundancy analysis showed that litter N, C:N, and K were the main factors affecting soil fauna community structure. The results indicated that the tree species with thicker litter layer and higher N and K contents may be conducive to enhancing the diversity of soil fauna community and affecting the distribution of different functional groups, thus contributing to the maintenance of forest biodiversity.
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Responses of taxonomic and functional diversity of soil mites to altitudinal changes in forest ecosystems of Lyuliang Mountains, Shanxi, China
LIU Qianyu, WANG Ranghu, WU Xinjie, DOU Yongjing
Chinese Journal of Applied Ecology 2023, 34 (
12
): 3301-3312. DOI:
10.13287/j.1001-9332.202312.032
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481
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The altitudinal gradient pattern of mountain biodiversity and its formation mechanism are hot topics in ecological research. The altitudinal variations of belowground invertebrates are less understood than aboveground plants and animals. With soil mites as the model soil animals, we investigated their distribution patterns from 1318 m to 2500 m above sea level in three mountains of Lyuliang Mountains based on species diversity and functional diversity. We used soil pH, total N, total P, total K, and organic matter content to identify potential drivers of soil mite communities and diversity along the altitudinal gradient. A total of 715 soil mites were collected, belonging to 3 orders, 27 families, 28 genera, and 29 species.
Phthiracarus clemens
,
Geolaelaps praesternalis
and
Diapterobates humeralis
were dominant mites. Non-metric multidimensional scaling showed that soil mites community composition varied significantly among different altitudes due to
Epilohmannia ovata
predominated in high altitude and
P. clemens
predominated in middle altitude. There were significant differences in individual density of soil mites among different altitudes. The Margalef, Shannon, and Simpson indices followed a unimodal distribution pattern along the altitudinal gradient. Functional richness and functional evenness showed a unimodal distribution pattern along the altitudinal gradient, while other functional diversity indices changed little with altitude. The RDA results indicated that total K and soil pH were the major drivers for the variations in soil mite communities. The Pielou index of soil mites was significantly positively correlated with soil pH, while functional evenness was negatively correlated with altitude. Individual density, species number, Margalef, Simpson and Shannon indices were significantly positively correlated with functional richness index. Species diversity and functional diversity of soil mites varied differently with altitude. In the future, we should strengthen long-term monitoring and dynamic functional properties of soil mites and the community assembly to deeply understand the relationship between biodiversity and ecosystem functions.
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Effects of ant nests on soil CH
4
emissions from
Syzygium oblatum
communities of a secondary tropical forest
XIE Lingling, WANG Shaojun, XIAO Bo, WANG Zhengjun, GUO Zhipeng, GUO Xiaofei, LUO shuang, LI Rui, XIA Jiahui, LAN Mengjie, YANG Shengqiu
Chinese Journal of Applied Ecology 2024, 35 (
3
): 678-686. DOI:
10.13287/j.1001-9332.202403.030
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402
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Exploring the effects of ant nests on soil CH
4
emissions in the secondary tropical forests is of great scientific significance to understand the contribution of soil faunal activities to greenhouse gas emissions. With static chamber-gas chromatography method, we measured the dry-wet seasonal dynamics of CH
4
emissions from ant nests and control soils in the secondary forest of
Syzygium oblatum
communities in Xishuangbanna. We also examined the linkages of ant-mediated changes in functional microbial diversity and soil physicochemical properties with CH
4
emissions. The results showed that: 1) Ant nests significantly accelerated soil CH
4
emissions, with average CH
4
emissions in the ant nests being 2.6-fold of that in the control soils. 2) The CH
4
emissions had significant dry-wet seasonal variations, which was a carbon sink in the dry seasons (from -0.29±0.03 to -0.53±0.02 μg·m
-2
·h
-1
) and a carbon source in the wet seasons (from 0.098±0.02 to 0.041±0.009 μg·m
-2
·h
-1
). The CH
4
emissions were significantly higher in ant nests than in control soils. The CH
4
emissions from the ant nests had smaller dry-wet seasonal variation (from -0.38±0.01 to 0.12±0.02 μg·m
-2
·h
-1
) than those in the control soils (from -0.65±0.04 to 0.058±0.006 μg·m
-2
·h
-1
). 3) Ant nests significantly increased the values (6.2%-37.8%) of soil methanogen diversity (
i.e
., Ace and Shannon indices), temperature and humidity, carbon pools (
i.e
., total, easily oxidizable, and microbial carbon), and nitrogen pools (
i.e
., total, hydrolyzed, ammonium, and microbial biomass nitrogen), but decreased the diversity (
i.e
., Ace and Chao1 indices) of methane-oxidizing bacteria by 21.9%-23.8%. 4) Results of the structural equation modeling showed that CH
4
emissions were promoted by soil methanogen diversity, temperature and humidity, and C and N pools, but inhibited by soil methane-oxidizing bacterial diversity. The explained extents of soil temperature, humidity, carbon pool, nitrogen pool, methanogen diversity, and methane-oxidizing bacterial diversity for the CH
4
emission changes were 6.9%, 21.6%, 18.4%, 15.2%, 14.0%, and 10.8%, respectively. Therefore, ant nests regulated soil CH
4
emission dynamics through altering soil functional bacterial diversities, micro-habitat, and carbon and nitrogen pools in the secondary tropical forests.
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Effects of yak and Tibetan sheep grazing on soil arthropods community in an alpine meadow on the Qinghai-Tibet Plateau, China.
SUN Caicai, DONG Quanmin, YANG Xiaoxia, FENG Bin, SHI Guang, LYU Weidong
Chinese Journal of Applied Ecology 2023, 34 (
11
): 3127-3134. DOI:
10.13287/j.1001-9332.202311.031
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We investigated the responses of community structure of soil arthropods to yak and Tibetan sheep grazing based on a manipulated grazing experiment at the alpine meadow livestock Adaptive Management Platform, which locates in Haiyan County, Qinghai Province. The results showed that the obtained soil arthropods belonged to 26 families, 8 orders, and 4 classes, with Acaroidae and Oribatida as the dominant groups. Yak and Tibetan sheep grazing decreased the abundance but increased Shannon index, Margalef index and Pielou index of soil arthropods. Yak grazing significantly increased the quantity of the predatory soil arthropod groups. Yak and Tibetan sheep gra-zing significantly increased the quantity of the detritivore soil arthropod groups, but did not affect the quantity of the omnivorous and phytophagous soil arthropod groups. Yak and Tibetan sheep grazing significantly reduced the abundance of soil mites. Soil bulk density, available potassium, and available nitrogen were the main abiotic factors affecting soil arthropods community composition.
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Effects of ant nesting on seasonal dynamics of soil CH
4
emissions in a tropical rubber-plantation forest
WANG Zhengjun, WANG Shaojun, XIAO Bo, XIE Lingling, GUO Zhipeng, GUO Xiaofei, LI Rui, LUO Shuang, XIA Jiahui, YANG Shengqiu, LAN Mengjie
Chinese Journal of Applied Ecology 2024, 35 (
6
): 1695-1704. DOI:
10.13287/j.1001-9332.202406.032
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Ant nests can affect the process and seasonal dynamics of forest soil methane emissions through mediating methane oxidation/reduction microorganisms and physicochemical environments. To explore the process and mechanism by which ant nests affect soil methane emissions from
Hevea brasiliensis
plantation in Xishuangbanna, we measured the seasonal dynamics of methane emissions from ant nest and non-nest soils by using static chamber-gas chromatography method, and analyzed the effect of ant nesting on the changes in functional microbial diversity, microhabitats, and soil nutrients in the plantations. The results showed that: 1) Ant nests significantly affected the mean annual soil methane emissions in tropical plantation. Methane emissions in ant nest were decreased by 59.9% than the non-nest soil. In the dry season, ant nest soil was a methane sink (-1.770 μg·m
-2
·h
-1
), which decreased by 87.2% compared with the non-nest soil, while it was a methane source (0.703 μg·m
-2
·h
-1
) that increased by 152.7% in the wet season. 2) Ant nesting affected methane emissions via changing soil temperature, humidity, carbon and nitrogen concentrations. In contrast to the control, the mean annual temperature, humidity, and carbon and nitrogen content increased by 4.9%-138.5% in ant nest soils, which explained 90.1%, 97.3%, 27.3%-90.0% of the variation in methane emissions, respectively. 3) Ant nesting affected the emission dynamics through changing the diversity and community structure of methane functional microbe. Compared with the control, the average annual methanogen diversity (Ace, Chao1, Shannon, and Simpson indices) in the ant nest ranged from -9.9% to 61.2%, which were higher than those (-8.7%-31.2%) of the methane-oxidising bacterial communities. The relative abundance fluctuations of methanogens and methanotrophic bacteria were 46.76% and -6.33%, respectively. The explaining rate of methanogen diversity to methane emissions (78.4%) was higher than that of oxidizing bacterial diversity (54.5%), the relative abundance explained by the dominant genus of methanogens was 68.9%. 4) The structural equation model showed that methanogen diversity, methanotroph diversity, and soil moisture were the main factors controlling methane emissions, contributing 95.6%, 95.0%, and 91.2% to the variations of emissions, respectively. The contribution (73.1%-87.7%) of soil temperature and carbon and nitrogen components to the emission dynamics was ranked the second. Our results suggest that ant nesting mediates the seasonal dynamics of soil methane emissions, primarily through changing the diversity of methane-function microorganisms and soil water conditions. The research results deepen the understanding of the mechanism of biological regulation of methane emission in tropical forest soil.
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