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应用生态学报 ›› 2012, Vol. 23 ›› Issue (05): 1240-1246.

• 研究报告 • 上一篇    下一篇

利用DNA条形码技术识别植物物种

裴男才**   

  1. (中国林业科学研究院热带林业研究所, 广州 510520)
  • 出版日期:2012-05-18 发布日期:2012-05-18

Identification of plant species based on DNA barcode technology.

PEI Nan-cai   

  1. (Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, China)
  • Online:2012-05-18 Published:2012-05-18

摘要: DNA条形码技术能够快速、准确地识别物种,对于开展基础性的分类学研究和应用性的生物多样性研究极为重要.本文对鼎湖山20 hm2大样地183个植物物种进行DNA条形码测序.结果表明: 单个条形码片段时, psbA-trnH的综合成功率最高(75%),其次是matK(70%)和rbcL(56%);片段组合时,matK+rbcL+psbA-trnH三片段组合的物种水平识别率在87%以上,随后是matK+psbA-trnH(85%)、rbcL+psbA-trnH(83%)和matK+rbcL(81%).综合了亚热带波多黎各的LFDP样地(143个种)和热带巴拿马的BCI样地(296个种)以及圭亚那的Nouragues样地(254个种)3个森林类型的研究结果,评价DNA条形码各片段在4个森林样地的通用性.在热带和亚热带地区的森林样地中,各片段测序成功率分别为rbcL(93%,95.1%)、psbA-trnH(91.5%,94.6%)和matK(68.5%,79.7%).在植物类群水平上,核心条形码片段matK+rbcL组合的物种准确识别率不高,只在局部群落中表现较为理想;而三位点DNA条形码片段组合在热带和亚热带森林样地中综合成功率可达84%和90%.

关键词: DNA条形码技术, 物种鉴定, 局部群落, 生物多样性, 热带森林, 亚热带森林

Abstract: It is crucial for the studies of taxonomy and biodiversity by using DNA barcode technology to fast and accurately make species identification in the forests across tropics and temperate zones. In this study, the 183 plant species in a 20 hm2 subtropical forest plot in Dinghushan (DHS) National Nature Reserve of South China were sampled and sequenced, and the matK, rbcL, and psbA-trnH were employed to generate multilocus barcodes. For the plot, the psbA-trnH possessed the highest integral success rate, i.e., the product of sequencing recovery and correct species identification (75%), followed by matK (70%), and rbcL (56%). A combination of three-locus barcode (matK,rbcL and psbA-trnH) could identify greater than 87% of the total species, followed by two-locus barcode (85% for matK+psbA-trnH, 83% forrbcL+psbA-trnH, and 81% formatK+rbcL). A comparison was made with the previously published results from one subtropical forest plot (LFDP in Puerto Rico, 143 species) and two tropical forest plots (BCI in Panama, 296 species; and NRS in French Guiana, 254 species) to evaluate the universality and species identification correctness of the proposed DNA barcodes for these four forest plots. For the plots in tropics and subtropics, the sequencing success rate ofrbcL,psbA-trnH and matK were 93% and 95.1%, 91.5% and 94.6%, and 68.5% and 79.7%, respectively. The combination ofmatK+rbcL showed a high identification capacity in geographically restricted regions  in taxonomic groups, whereas the three-locus barcode had a high rate of correct species identification both in tropics (84%) and in subtropics (90%).

Key words: DNA barcode technology, species identification, local community, biodiversity, tropical forest, subtropical forest.