[1] DeLong EF. Archaea in coastal marine environments. Proceedings of the National Academy of Sciences of the United States of America, 1992, 89: 5685-5689 [2] Fuhrman JA, McCallum K, Davis AA. Novel major archaebacterial group from marine plankton. Nature, 1992, 356: 148-149 [3] Schleper C, Jurgens G, Jonuscheit M. Genomic studies of uncultivated archaea. Nature Reviews Microbiology, 2005, 3: 479-488 [4] Woese CR, Kandler O, Wheelis ML. Toward a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proceedings of the National Academy of Sciences of the United States of America, 1990, 87: 4576-4579 [5] Liu T-M (刘天明), Shen Y-L (申玉龙), Liu Q-J (刘庆军), et al. The unique Entner-Doudoroff (ED) glycolysis pathway of glucose in Archaea: A review. Acta Microbiologica Sinica (微生物学报), 2008, 48(8): 1126-1131 (in Chinese) [6] Valentine DL, Reeburgh WS. New perspectives on anaerobic methane oxidation. Environmental Microbiology, 2010, 2: 477-484 [7] He J-Z (贺纪正), Zhang L-M (张丽梅). Advances in ammonia-oxidizing microorganisms and global nitrogen cycle. Acta Ecologica Sinica (生态学报), 2009, 29(1): 406-415 (in Chinese) [8] Li S-G (李曙光), Pi Y-D (皮昀丹), Zhang Chuan-lun. The study of archaea: A review and perspectives. Journal of University of Science and Technology of China (中国科学技术大学学报), 2007, 37(8): 830-838 (in Chinese) [9] Norby RJ, Jackson RB. Root dynamics and global change: Seeking an ecosystem perspective. New Phytolo-gist, 2000, 147: 3-12 [10] Block RMA, Van Rees KCJ, Knight JD. A review of fine root dynamics in Populus plantations. Agroforestry Systems, 2006, 67: 73-84 [11] Hendricks JJ, Aber JD, Nadelhoffer KJ, et al. Nitrogen controls on fine root substrate quality in temperate forest ecosystems. Ecosystems, 2000, 3: 57-69 [12] Hartmann A, Schmid M, Tuinen DV, et al. Plant-driven selection of microbes. Plant and Soil, 2009, 321: 235-257 [13] Jones DL, Hodge A, Kuzyakov Y. Plant and mycorrhizal regulation of rhizodeposition. New Phytologist, 2010, 163: 459-480 [14] Eisenhauer N, Scheu S, Jousset A. Bacterial diversity stabilizes community productivity. PLoS One, 2012, 7(3): e34517 [15] Stéphane U, Marc B, Claude M, et al. Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environmental Microbio-logy Report, 2010, 2: 281-288 [16] Li XZ, Rui JP, Mao YJ, et al. Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar. Soil Biology and Biochemistry, 2014, 68: 392-401 [17] Wang Q-T (汪其同), Gao M-Y (高明宇), Liu M-L (刘梦玲), et al. Illumina Miseq sequencing-based fungal community of rhizosphere soils along root orders of poplar plantation. Chinese Journal of Applied Ecology (应用生态学报), 2017, 28(4): 1177-1183 (in Chinese) [18] Eissenstat DM, Wells CE, Yanai RD, et al. Building roots in a changing environment: Implications for root longevity. New Phytologist, 2000, 147: 33-42 [19] Mei L (梅 莉), Wang Z-Q (王政权), Cheng Y-H (程云环), et al. A review: Factors influencing fine root longevity in forest ecosystems. Acta Phytoecologica Sinica (植物生态学报), 2004, 28(4): 704-710 (in Chinese) [20] Zhu W-R (朱婉芮), Wang Q-T (汪其同), Liu M-L (刘梦玲), et al. The difference in fine root lifespan between successive rotations of poplar plantation and the dominant causal factors. Acta Ecologica Sinica (生态学报), 2018, 38(1): 226-235 (in Chinese) [21] Magocˇ T, Salzberg SL. FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinforma-tics, 2011, 27: 2957-2963 [22] Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 2010, 7: 335-336 [23] Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 2010, 26: 2460, doi: 10.1093/bioinformatics/btq461 [24] Desantis TZ, Hugenholtz P, Larsen N, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology, 2006, 72: 5069-5072 [25] Bokulich NA, Subramanian S, Faith JJ, et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods, 2013, 10: 57-59 [26] Chao A. Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics, 1984, 11: 265-270 [27] Dawid AP. Stopping rules and estimation for recapture debugging with unequal failure rates. Biometrika, 1993, 80: 193-201 [28] Shannon CE. Mathematical theory of communication. Bell System Technical Journal, 1948, 27: 379-423 [29] Simpson EH. Measurement of diversity. Nature, 1949, 163: 688 [30] Bai Y-F (白永飞), Xu Z-X (许志信). β-diverslty of Stipa communities in Inner Mongolia Platean. Chinese Journal of Applied Ecology (应用生态学报), 2000, 8(3): 408-412 (in Chinese) [31] Huang Y-M (黄玉梅), Zhang J (张 健), Yang W-Q (杨万勤). Ecological distribution patterns of soil microbes under artificial Eucalyptus grandis stand. Chinese Journal of Applied Ecology (应用生态学报), 2006, 17(12): 2327-2331 (in Chinese) [32] Nicol GW, Tscherko D, Embley TM, et al. Primary succession of soil Crenarchaeota across a receding glacier foreland. Environmental Microbiology, 2005, 7: 337-347 [33] Nicol GW, Glover LA, Prosser JI. Spatial analysis of archaeal community structure in grassland soil. Applied and Environmental Microbiology, 2003, 69: 7420-7429 [34] Francis CA, Roberts KJ, Beman JM, et al. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102: 14683-14688 [35] Leininger S, Urich T, Schloter M, et al. Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature, 2006, 442: 806-809 [36] Liu J-J (刘晶静), Wu W-X (吴伟祥), Ding Y (丁 颖), et al. Ammonia-oxidizing archaea and their important roles in nitrogen biogeochemical cycling: A review. Chinese Journal of Applied Ecology (应用生态学报), 2010, 21(8): 2154-2160 (in Chinese) [37] Boer WD, Gunnewiek PJAK, Veenhuis M, et al. Nitrification at low pH by aggregated chemolithotrophic bacteria. Applied and Environmental Microbiology, 1991, 57: 3600-3604 [38] He J-Z (贺纪正), Shen J-P (沈菊培), Zhang L-M (张丽梅). Advance in the research of soil non-thermophiilic Crenarchaeota. Acta Eclogica Sinica (生态学报), 2009, 29(9): 5047-5055 (in Chinese) [39] Hajek P, Hertel D, Leuschner C. Root order- and root age-dependent response of two poplar species to belowground competition. Plant and Soil, 2014, 377: 337-355 [40] Bagniewska-Zadworna A, Stelmasik A, Minicka J. From birth to death: Populus trichocarpa fibrous roots functional anatomy. Biologia Plantarum, 2014, 58: 551-560 [41] Kuzyakov Y. Priming effects: Interactions between living and dead organic matter. Soil Biology and Biochemistry, 2010, 42: 1363-1371 [42] Craine JM, Morrow C, Fierer N. Microbial nitrogen limi-tation increases decomposition. Ecology, 2007, 88: 2105-2113 [43] Fontaine S, Henault C, Aamor A, et al. Fungi mediate long term sequestration of carbon and nitrogen in soil through their priming effect. Soil Biology and Biochemi-stry, 2011, 43: 86-96 [44] Nannipieri P, Ascher J, Ceccherini MT, et al. Microbial diversity and soil functions. European Journal of Soil Science, 2010, 54: 655-670 [45] Sun Y (孙 悦), Xu X-L (徐兴良), Yakov KUZYAKOV. Mechanisms of rhizosphere priming effects and their ecological significance. Chinese Journal of Plant Ecology (植物生态学报), 2014, 38(1): 62-75 (in Chinese) [46] Eissenstat DM, Yanai RD. The ecology of root lifespan. Advances in Ecological Research, 1997, 27: 1-60 [47] Zhu W-R (朱婉芮). Difference of Poplar Fine Roots Longevity Between Successive Rotation Plantations and Its Regulation Mechanism. Master Thesis. Tai’an, Shandong: Shandong Agricultural University, 2016 (in Chinese) [48] Hense BA, Kuttler C, Mueller J, et al. Opinion: Does efficiency sensing unify diffusion and quorum sensing? Nature Reviews Microbiology, 2007, 5: 230-239 [49] Von Bodman SB, Bauer WD, Coplin DL. Quorum sen-sing in plant-pathogenic bacteria. Annual Review of Phytopathology, 2003, 41: 455-482 [50] Guo X-P (郭晓鹏), Zhang G-S (张桂山), Liu X-L (刘晓黎), et al. Detection of the quorum sensing signal in methanogenic archaea. Acta Microbiologica Sinica (微生物学报), 2011, 51(9): 1200-1204 (in Chinese) [51] Tateda K, Ishii Y, Horikawa M, et al. The Pseudomonas aeruginosa autoinducer N-3-oxododecanoyl homoserine lactone accelerates apoptosis in macrophages and neutrophils. Infection and Immunity, 2003, 71: 5785-5793 [52] Mathesius U, Mulders S, Gao M, et al. Extensive and specific responses of a eukaryote to bacterial quorum-sensing signals. Proceedings of the National Academy of Sciences of the United States of America, 2003, 100: 1444-1449 [53] Díaz-Tielas C, Graña E, Sotelo T, et al. The natural compound trans-chalcone induces programmed cell death in Arabidopsis thaliana roots. Plant, Cell and Envi-ronment, 2012, 35: 1500-1517 [54] Francis CA, Roberts KJ, Beman JM, et al. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102: 14683-14688 |